Program Schedule

The times listed are Eastern Standard Time.

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THU, MAR 11
MON, MAR 22
TUE, MAR 23
WED, MAR 24
THU, MAR 25

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S03: Panel - Working Towards Shareable and Interoperable Patient and Clinician Facing Clinical Decision Support - Experiences from the Field

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Kristen Miller Roland Gamache Joshua Richardson Laura Marcial

2021032211:3013:00 000

MON, MAR 22

5F78B9F2-7544-EB11-80E9-E2016027A0A5
7578B9F2-7544-EB11-80E9-E2016027A0A5
9578B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S04: Oral Presentations - TBI Foundations & Application

Session Credits: 1.50

Oral Presentations

Translational Bioinformatics Session

SPEAKER(S):

Jae-Yoon Jung Arohee Bhoja Brianna Chrisman Astrid Manuel Maya Varma

Mapping the Unmapped Readspace in Whole Genome Sequencing Data: The Blood Microbiome of 1,000 Families Brianna Chrisman

Frequent Sampling of LCLs may Affect Genotyping Quality in Whole Genome Sequencing Jae-Yoon Jung

An Integrative Network-based Analysis of Genetic Variants and Differential DNA Methylation in Brain Tissue of Multiple Sclerosis Patients Astrid Manuel

Applying a computational transcriptomics-based drug repositioning pipeline to identify therapeutic candidates for endometriosis Arohee Bhoja

Maximum-flow formulation improves feature stability of machine learning models trained on high-dimensional whole genome datasets Maya Varma

2021032211:3013:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S05: Panel - Data Acquisition and Harmonization of COVID-19 Case Data Across Common Data Models: Early Field Reports from the National COVID Cohort Collaborative (N3C)

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Xiaohan Zhang Stephanie Hong Emily Pfaff Dazhi Jiao Christopher Chute

2021032211:3013:00 000

MON, MAR 22

6778B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
7F78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S06: Panel - Unlocking Clinical Concepts Embedded in Unstructured Text to Advance COVID-19 Analytics for National COVID Cohort Collaborative (N3C)

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Sijia Liu Hongfang Liu Hua Xu Justin Guinney Rafael Fuentes Peter Szolovits

2021032211:3013:00 000

MON, MAR 22

6378B9F2-7544-EB11-80E9-E2016027A0A5
6B78B9F2-7544-EB11-80E9-E2016027A0A5
B878B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 3:00 PM EST

S07: Oral Presentations - Medications and Drug Adverse Events

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Yue Wang Jonathan Bidwell Franck Diaz-Garelli Aidan Gilson Douglas Arneson

Analysis of Health Trajectories Leading to Adverse Opioid Events Aidan Gilson

A Contextual Inquiry: FDA Investigational New Drug Clinical Review Jonathan Bidwell

A Generalizable Framework for Exhaustive Cost-Effectiveness Analysis of Drugs for a Given Clinical Indication Leveraging Real-World Evidence Douglas Arneson

Exploring the Hazards of Scaling Up Clinical Data Analyses: A Drug Side Effect Discovery Case Report Franck Diaz-Garelli

An Evaluation of Clinical Natural Language Processing Systems to Extract Symptomatic Adverse Events from Patient-Authored Free-Text Narratives Yue Wang

2021032213:3015:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 3:00 PM EST

S08: Oral Presentations- Improving Data Quality

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Meenakshi Mishra Yue Yu Rose Glavin Bryan Wilbanks Christian Rose

Hypothyroidism - A Causal Approach to Testing Assumptions against Empirical Data. Rose Glavin

Impact of Data Entry Interface Design on Cognitive Workload, Documentation Correctness, and Documentation Efficiency Bryan Wilbanks

Developing an ETL Tool for Converting PCORnet CDM into OMOP CDM Yue Yu

Mine the Gap: Utilizing Process Mining to Identify Actual Stroke Care Versus the Guidelines Christian Rose

Bridging the Gaps between Evidence and Practice of Assessing Risks and Addressing Harms by Primary Care Providers for Adults on Chronic Opioid Therapy Meenakshi Mishra

2021032213:3015:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 3:00 PM EST

S09: Oral Presentations - Patient-centered Care and Outcomes

Session Credits: 1.50

Oral Presentations

Informatics Implementation Session

SPEAKER(S):

Jiancheng Ye Olivia Milgrom Jeffrey Klann Ibukun Fowe Zoe Liao

Applying the Extension for Community Health Care Outcomes (ECHO) Model for Cancer Prevention and Survivorship Care: Formative Evaluation of Program Design Olivia Milgrom

Using Patient Counting Analytics to Enhance Data Quality in a Nationwide Clinical Research Network Jeffrey Klann

Challenges to Global Standardization of Outcome Measures Zoe Liao

The Effects and Patterns among Mobile Health, Social Determinants and Physical Activity: A National Cross-Sectional Study Jiancheng Ye

Evaluating Organizational Readiness for change in the Implementation of Telehealth and mobile Health Interventions for Chronic Disease Management Ibukun Fowe

2021032213:3015:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 3:00 PM EST

S10: Oral Presentations - Never Stop (Machine) Learning

Session Credits: 1.50

Oral Presentations

Translational Bioinformatics Session

SPEAKER(S):

YiFan Wu Joseph Beals Rima Arnaout Andrzej Prokop Harshavardhan Srijay

Quantifying COVID-19 In-hospital Deterioration Risk Using Acuity at Admission as Measured by the Rothman Index Joseph Beals

Expert-level prenatal detection of complex congenital heart disease from screening ultrasound using deep learning Rima Arnaout

Prediction of Blood-Brain Barrier Permeability to Drugs with FDA Adverse Event Report Derived Embeddings YiFan Wu

SAEgnal: A Predictive Assessment Framework for Optimizing Safety Profiles in Immuno-Oncology Combination Trials Andrzej Prokop

Predictive Modeling Using Transcriptomic Signatures of COVID-19 and Other Infectious Diseases Harshavardhan Srijay

2021032213:3015:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 3:00 PM EST

S11: Panel - Lessons Learned from Healthcare Organizations Contributing Clinical Data to the National COVID Cohort Collaborative (N3C)

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Stéphane Meystre Ram Gouripeddi Jeffery Talbert Jeremy Harper

2021032213:3015:00 000

MON, MAR 22

6378B9F2-7544-EB11-80E9-E2016027A0A5
6B78B9F2-7544-EB11-80E9-E2016027A0A5
7D78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 1:30 PM - 5:00 PM EST

W01: Developing Natural Language Processing Solutions to Facilitate Clinical and Translational Research

Session Credits: 3.00

Workshop

Clinical Research Informatics Session

SPEAKER(S):

Hongfang Liu Hua Xu

2021032213:3017:00 057

MON, MAR 22

B878B9F2-7544-EB11-80E9-E2016027A0A5
C39D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 3:30 PM - 5:00 PM EST

S12: Oral Presentations - Equity, Accuracy, and Reproducibility of Clinical and Translational Research

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Suranga Kasthurirathne Naleef Fareed Agata Foryciarz Eun Ji Kim Mr. Wentao Li

Community-based Organizations as Partners in Addressing Racial Disparities in Infant Mortality: Establishing an Infrastructure for Routine Data Collection. Naleef Fareed

Clinical Impact of Satisfying Group Fairness Constraints in Revised Pooled Cohort Equations Agata Foryciarz

Identifying Biases in Clinical Decision Models Designed to Predict Need of Wraparound Services Suranga Kasthurirathne

Improving social determinants of health screening: Examination of patients with limited English proficiency Eun Ji Kim

VERTIcal Grid lOgistic regression with Confidence Intervals (VERTIGO-CI) Mr. Wentao Li

2021032215:3017:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 3:30 PM - 5:00 PM EST

S13: Oral Presentations - Methods in NLP

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Stéphane Meystre Kristin Bennett Omid Ghiasvand Mihir Khambete Jeffrey Smith

Quantification of BERT Diagnosis Generalizability Across Medical Specialties Using Semantic Dataset Distance Mihir Khambete

Pseudo-data generation for the extraction of Problems, Treatments and Tests Jeffrey Smith

A Discrete Joint Model for Entity and Relation Extraction from Clinical Notes Omid Ghiasvand

COVID-19 Diagnostic Testing Prediction Using Natural Language Processing to Power a Data-Driven Symptom Checker Stéphane Meystre

Unmasking the conversation on masks: Natural language processing for topical sentiment analysis of COVID-19 Twitter discourse Kristin Bennett

2021032215:3017:00 000

MON, MAR 22

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 3:30 PM - 5:00 PM EST

S14: Panel - Implementability of Deep Learning based Predictive Models: Bridging Data Science Research and Real-World Practice

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Robert Murphy Kathleen McGrow Degui Zhi Angela Ross Laila Gindy Bekhet

2021032215:3017:00 000

MON, MAR 22

A778B9F2-7544-EB11-80E9-E2016027A0A5
AF78B9F2-7544-EB11-80E9-E2016027A0A5
CC78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 3:30 PM - 5:00 PM EST

S15: Panel - Intelligent Integrative Informatics Approaches for Big Data Aggregation, Sharing and Analytics in Stem Cell Research

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Fadia Shaya Kirill Borziak Avi Ma'ayan Joseph Finkelstein Ben MacArthur

2021032215:3017:00 000

MON, MAR 22

6378B9F2-7544-EB11-80E9-E2016027A0A5
6D78B9F2-7544-EB11-80E9-E2016027A0A5
7178B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 3:30 PM - 5:00 PM EST

S16: Panel - Are We There Yet? Finding, Analyzing and Using Better Information for Pandemics

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Karen Monsen Nicholas Tatonetti Kate Fultz Hollis John Lauerman Scott McGrath

2021032215:3017:00 000

MON, MAR 22

6B78B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
9D78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 10:00 AM - 11:00 AM EST

Translational Bioinformatics/Data Science Year in Review: Dr. Nicholas Tatonetti

Session Credits: 1.00

Plenary

SPEAKER(S):

Nicholas Tatonetti

2021032310:0011:00 000

TUE, MAR 23

CC9D8809-7244-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 1:00 PM EST

S17: Oral Presentations - Applied CRI: Solving Real World Problems

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Silvia Canelón Yiye Zhang Jay Patel Xinyu Li Ping Zhang

Brain Atlas Guided Attention U-Net for White Matter Hyperintensity Segmentation Ping Zhang

The Impact of Sickle Cell Status on Adverse Delivery Outcomes Using Electronic Health Record Data Silvia Canelón

Comparison of Ease of Use and Comfort in Fitness Trackers for Subjects Impaired by Parkinson’s disease: An Exploratory Study Jay Patel

Examining Patterns of Computerized Physician Order Entry in Emergency and Inpatient Heart Failure Management Yiye Zhang

Differentiating between Hemorrhage and Sepsis for Hypotensive Patients Using Arterial Pressure Data Xinyu Li

2021032311:3013:00 000

TUE, MAR 23

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 1:00 PM EST

S18: Oral Presentations - Interpreting and Explaining AI

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Seyedeh Neelufar Payrovnaziri Yoonyoung Park Jifan Gao Melanie Pradier Panayiotis Petousis

Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction Seyedeh Neelufar Payrovnaziri

More Generalizable Models for Sepsis Detection Under Covariate Shift Jifan Gao

Algorithmic Fairness in Risk Prediction Models for Patients with Opioid Use Disorder Yoonyoung Park

Towards a Checklist for Data-driven Predictive Models Panayiotis Petousis

Preferential Mixture-of-Experts: Interpretable Models that Rely on Human Expertise As Much As Possible Melanie Pradier

2021032311:3013:00 000

TUE, MAR 23

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 1:00 PM EST

S19: Panel - Evidence-based Tools and Strategies for Evaluating the Safety of Health Information Technology Systems: The State of Practice, Challenges, and the Road Ahead

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Aaron Dietz Jeanie Scott Michael Rosen Teja Kuruganti David Classen

2021032311:3013:00 000

TUE, MAR 23

5F78B9F2-7544-EB11-80E9-E2016027A0A5
A178B9F2-7544-EB11-80E9-E2016027A0A5
AD78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 1:00 PM EST

S20: Panel - Computable Phenotypes: A Primer on Creation, Evaluation and Applications

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Lisa Bastarache Jeffrey Brown Nicholas Tatonetti Mark Weiner

2021032311:3013:00 000

TUE, MAR 23

8B78B9F2-7544-EB11-80E9-E2016027A0A5
9978B9F2-7544-EB11-80E9-E2016027A0A5
96D8843C-7644-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 1:00 PM EST

S21: Panel - Harmonizing What to Analyze in the National COVID Cohort Collaborative (N3C): Lessons Learned

Session Credits: 1.50

Panel

Data Science Session

SPEAKER(S):

Joel Saltz Andrew Girvin Richard Moffitt Kristin Kostka Harold Lehmann

2021032311:3013:00 000

TUE, MAR 23

6B78B9F2-7544-EB11-80E9-E2016027A0A5
6D78B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 11:30 AM - 3:00 PM EST

W02: Common Approaches to FAIR Data Policy in the US and Europe: key issue to accelerate science in times of Covid-19 Pandemic

Session Credits: 3.00

Workshop

Clinical Research Informatics Session

SPEAKER(S):

Catherine Chronaki Neil Bahroos Carlos Parra-Calderon Anthony Solomonides Umberto Tachinardi

2021032311:3015:00 057

TUE, MAR 23

642860FE-7144-EB11-80E9-E2016027A0A5
6B78B9F2-7544-EB11-80E9-E2016027A0A5
9D78B9F2-7544-EB11-80E9-E2016027A0A5
9CD8843C-7644-EB11-80E9-E2016027A0A5
C39D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 1:30 PM - 3:00 PM EST

S22: Panel - What We Know About Data Warehousing in Support of Clinical and Translational Research: National Survey Results and the Work Ahead

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

David Dorr Catherine Craven Thomas Campion Jeremy Harper Boyd Knosp

2021032313:3015:00 000

TUE, MAR 23

7978B9F2-7544-EB11-80E9-E2016027A0A5
8D78B9F2-7544-EB11-80E9-E2016027A0A5
9CD8843C-7644-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 1:30 PM - 3:00 PM EST

S23: Oral Presentations - Discovery of Knowledge: The Next Frontier

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Eric Lee Jie Zhu Toan Ong Benjamin Nye Nicholas Larson

Recommender system of scholarly papers using public datasets Jie Zhu

Understanding Clinical Trial Reports: Extracting Medical Entities and Their Relations Benjamin Nye

Privacy-Preserving Transitive Record Linkage Toan Ong

Privacy-preserving Sequential Pattern Mining in distributed EHRs for Predicting Cardiovascular Disease Eric Lee

Deriving family history scores from electronic health record data for prediction of disease risk Nicholas Larson

2021032313:3015:00 000

TUE, MAR 23

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 1:30 PM - 3:00 PM EST

S24: Oral Presentations - Two Sides of the Same Coin: Clinical Decision Support and Quality Measurement

Session Credits: 1.50

Oral Presentations

Informatics Implementation Session

SPEAKER(S):

Shivani Sivasankar Andrew Wen Michael Watkins Katarzyna Tarnowska Katy Trinkley

ResultsMyWay: combining Fast Healthcare Interoperability Resources (FHIR), Clinical Quality Language (CQL), and informational resources to create a newborn screening application Michael Watkins

Ranking Methodology to Evaluate the Severity of a Quality Gap Using a National EHR Database Shivani Sivasankar

Explainable AI-based clinical decision support system for hearing disorders Katarzyna Tarnowska

Outcomes of a Clinical Decision Support (CDS) Tool Informed by Implementation Science: A Cluster-Randomized Controlled Trial to Improve Heart Failure Prescribing Katy Trinkley

CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping Andrew Wen

2021032313:3015:00 000

TUE, MAR 23

C59D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 1:30 PM - 3:00 PM EST

S25: Oral Presentations - Phenotyping: Implementation and Application

Session Credits: 1.50

Oral Presentations

Multi-track Session

SPEAKER(S):

Martin Chapman Asher Moldwin David Schlueter Sarah Tadlock Alice Tang

Empirical Findings on the Role of Structured Data, Unstructured Data, and their Combination for Automatic Clinical Phenotyping Asher Moldwin

Phenoflow: A Microservice Architecture for Portable Workflow-based Phenotype Definitions Martin Chapman

Deep Clinical Phenotyping and Network Analysis of Alzheimer Disease Patients Leveraging Electronic Medical Records Data Alice Tang

Development of an Informatics Algorithm to Link Seasonal Infectious Diseases to Birth-Dependent Diseases Across Species: A Case Study with Osteosarcoma Sarah Tadlock

Temporal Phenotypic Progression in Neurofibromatosis Type 1 David Schlueter

2021032313:3015:00 000

TUE, MAR 23

C59D8809-7244-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 1:30 PM - 3:00 PM EST

S26: Panel - Performance of COVID-19 Research in the CTSA ACT Network

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Michele Morris Griffin Weber Jeffrey Klann Dipti Ranganathan Shawn Murphy

2021032313:3015:00 000

TUE, MAR 23

6B78B9F2-7544-EB11-80E9-E2016027A0A5
A778B9F2-7544-EB11-80E9-E2016027A0A5
CC78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 3:30 PM - 4:30 PM EST

Turn Right Here: A Journey through the Pathways of AMIA - Q&A Session for Students

Special Event

SPEAKER(S):

Dr. Adela Grando Dr. Patricia Dykes Gretchen Purcell Jackson Mary Regina Boland Saif Khairat Ms. Hope Gray Scott McGrath

2021032315:3016:30 000

TUE, MAR 23

642860FE-7144-EB11-80E9-E2016027A0A5
64FFB973-9B5A-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 5:00 PM - 6:30 PM EST

Poster Session 1

Posters

Medication information resource tools: Who uses them and for what purpose are they used? Shilo Anders

A Review of Discordance in Disparate Clinical Data through the Construction of a General Pediatric Cancer Population Ashley Batugo

Evaluation of SOFA score for Outcome Prediction in COVID-19 ICU Patients Kriti Bhattari

Extracting COVID-19 Related Symptoms from EHR Data: A Comparison of Three Methods Hannah Burkhardt

Analysis of EHR-driven Standardized Nursing Data to Explore Psychospiritual Care for Hospitalized Patients Fabiana Dos Santos

Preliminary Experience with Teleophthalmology in Residency Education Michael Fliotsos

Explore the Usage of a Multi-modal Social Risk Decision Support Tool in Primary Care and Patient Characteristics Weiwei Ge

Application of an informatics needs assessment to guide discussions on the development of a roadmap for an informatics-savvy injury center Jeffrey Gordon

Resynthesizing MIMIC-III Personally Identifiable Information Tags to Increase Corpus Utility: Process and Impact Assessment Paul Heider

Increased utilization of telemedicine in cancer patients during the COVID-19 pandemic Hu Huang

Quantifying Record Linkage of Research Studies with CMS Claims Data Vojtech Huser

The Potential in Standardized Process for Dysphagia Rehabilitation after Cerebrovascular Diseases Shogo Kato

Social Determinants Associated with COVID-19 Mortality in the United States Kristin Bennett

Automated Category Alignment Applied to Different De-identification Annotation Schemata Youngjun Kim

Maturity in Enterprise Data Warehouses for Research Operations: Initial Model and Pilot Results Boyd Knosp

Research Recruitment with the Patient Portal and Clinical Data Warehouse Adam Lee

Applying deterministic and probabilistic record linkage approaches to quantify residential history in the electronic health record Xuan Lin

Comparison and Analysis of Concordance for Two Popular Geocoding Methods Applied to Electronic Health Record Data Selah Lynch

Prediction of Gestational Diabetes Mellitus in Overweight and Obese Caucasian Women using Machine Learning Yuhan Du

PrecisionFDA Brain Cancer Predictive Modeling and Biomarker Discovery Challenge Yuri Gusev

Modeling Alzheimer’s Disease by Combining Knowledge Extracted from Biomedical Literature with Biomedical Ontologies Scott Malec

Decision Support to Engage Consumers in the Selection of Health Benefits Mollie McKillop

Combining Weather and Pollution Indicators with Insurance Claims on Identifying and Predicting Asthma Prevalence and Hospitalizations Divya Mehrish

Health Care Ecosystem Stage - Health Care Actors' Roles to Improve Quality with Clinical Data Exchanges Sandi Mitchell

Uncovering the potential biological mechanisms between a chemical and a phenotype Christopher Hawthorne

The Patient Voice in Clinical Practice: Results of Qualitative Interviews with Patients Completing Patient-Reported Outcomes Therese Nelson

The Application of Social Network Analysis for COVID-19 Nosocomial Infection Control Mina Ostovari

Content-based Recommendation Systems to Improve Reusability of Gene Expression Omnibus Datasets Braja Patra

Ascertaining Chronic Condition Status from Electronic Health Records with Patient Problem Lists versus Encounter Diagnosis Records Mr. Robert Voss

System Architecture and Design of a US Department of Veterans Affairs Hospital Information System Integrated System for Patient Safety at Care Transitions Michele Redding

Assessing the Impact of Telepsychiatry Implementation on Polypharmacy Reduction among Youth Detainees Humayera Islam

Comparison of Algorithms for Identifying HIV-Positive Individuals from Electronic Medical Records in a Large Multi-site Database Jessica Ridgway

Enabling Data Liquidity for Health Data Science: Initial Experiences with a Suite of APIs for EHR Data Ursula Rogers

Validating synthetic data derivatives using adapted inpatient cascade of care for Type II diabetes mellitus Irene Ryan

Syndromic surveillance for COVID19 from Reddit using multi-platform lexicons Abeed Sarker

The COVID-19 DREAM Challenge: enabling continuous benchmarking of models on EHR data Thomas Schaffter

The Informatics, Business and Logistic Challenges of Launching an Integrated Direct-to-Patient Registry During a Pandemic: The MMRF CureCloud Experience Steven Labkoff

Design of a Clinical Decision Support Tool for Erroneously Documented Vital Signs Connor Skeehan

Query Complexity Analysis on the TriNetX Platform Ezra Statsky-Frank

Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence Jing Su

Identifying Bad Actors in a Direct-to-Patient COVID-19 Registry Kevin Timms

Analysis of Racial and Socioeconomic Factors of COVID-19 Caroline Vieira

Telemedicine Utilization Among Non-Hospitalized Patients with COVID-19 SUWEI WANG

Integration between physician and nurse terminology in the care of patients with heart failure Abdul Zakkar

OSPred – A Digital Health Aid for Rapid Analysis of Early Endpoints (PFS, ORR) and Overall Survival (OS) Correlates in Non-Small Cell Lung Cancer (NSCLC) Clinical Trials Youyi Zhang

Ranking-based Convolutional Neural Network Models for Peptide-MHC Binding Prediction Xia Ning

From Traditional Anonymization to State-of-the-Art Privacy Protection - Overview of Features of the ARX Data Anonymization Tool Fabian Prasser

Toward a Neural Semantic Parsing System for EHR Question Answering Kirk Roberts

Leveraging Free-text Clinical Notes for Accurate Diagnostic Decision Support Using Pre-trained Language Representation Models Rui Tang

Automatic Gender Detection on Twitter for Health-related Cohort Studies Yuan-Chi Yang

2021032317:0018:30 000

TUE, MAR 23

CD9D8809-7244-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 10:00 AM - 11:00 AM EST

Clinical Research Informatics/Informatics Implementation Year in Review: Dr. Peter Embi

Session Credits: 1.00

Plenary

SPEAKER(S):

Peter Embi

2021032410:0011:00 000

WED, MAR 24

CC9D8809-7244-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S27: Panel - Extracting clinical data from EHRs to support research: Early lessons from the Cancer Moonshot?s IMPACT Consortium

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Firas Wehbe Jennifer Popovic Michael Hassett Roxanne Jensen Parvez Rahman

2021032411:3013:00 000

WED, MAR 24

7D78B9F2-7544-EB11-80E9-E2016027A0A5
7F78B9F2-7544-EB11-80E9-E2016027A0A5
96D8843C-7644-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S28: Systems Demonstrations - The Digital Era of National Collaboratives for Patient Care

Session Credits: 1.50

Systems Demonstrations

Informatics Implementation Session

SPEAKER(S):

Anupama Maram Kavishwar Wagholikar Rajan Chandras

Demonstration of a Self-service De-identified COVID-19 Data Lake Rajan Chandras

Deploying i2b2 as study-specific application for clinical data analysis Kavishwar Wagholikar

Synchronized Coordination of The ACT Network to Rapidly Identify COVID-19 Patients in an Evolving Global Crisis Anupama Maram

2021032411:3013:00 000

WED, MAR 24

CF9D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S29: Panel - Tales from the Front Line ? What Happens Between Here and There with HL7 Data Exchanges

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Sandi Mitchell Maureen Layden Fran Martin Eric Lachance Jason Vogt

2021032411:3013:00 000

WED, MAR 24

6F78B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
7D78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S30: Oral Presentations - You Had Me at Ontologies: Exploring Relationships

Session Credits: 1.50

Oral Presentations

Translational Bioinformatics Session

SPEAKER(S):

Suresh Bhavnani Rachel Melamed Tom Balmat Tiffany Callahan Justin Reese

A knowledge graph strategy for integrating clinical and experimental COVID-19 data Justin Reese

Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality Tiffany Callahan

Using SNOMED CT Relationships for Data Exploration and Discovery in Rare Diseases - An Interactive Data Visualization Tool Tom Balmat

Drug-wide association studies of cancer using real-world health data Rachel Melamed

Node and Edge Enrichment Analysis through Bipartite Networks: Application to Gene Mutations in Breast Cancer Suresh Bhavnani

2021032411:3013:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S31: Panel - Consortium for Clinical Characterization of COVID-19 by EHR (4CE)

Session Credits: 1.50

Panel

Data Science Session

SPEAKER(S):

Diane Keogh Griffin Weber Gabriel Brat Shawn Murphy

2021032411:3013:00 000

WED, MAR 24

6B78B9F2-7544-EB11-80E9-E2016027A0A5
7178B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 11:30 AM - 1:00 PM EST

S32: Oral Presentations - Lifelong Learning: From Undergraduate Education through Clinical Technology Adoption

Session Credits: 1.50

Oral Presentations

Multi-track Session

SPEAKER(S):

Blanca Himes Laura Wiley Mollie McKillop Anita Szerszen

Integrating Biomedical Informatics Training into Existing High School Curricula Blanca Himes

Communicating Results of Predictive Models to Patients Mollie McKillop

Developing and Deploying a Scalable Computing Platform to Support MOOC Education in Clinical Data Science Laura Wiley

Telemedicine use among geriatric outpatients during the COVID pandemic Anita Szerszen

2021032411:3013:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S33: Oral Presentations - COVID19 is No Match for Clinical Research Informatics

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Shyam Visweswaran Anita Walden Melissa Haendel Zachary Strasser Tanja Magoc

Rapid Creation of a De-Identified COVID-19 Dataset for Clinical Research Tanja Magoc

A COVID-19 Application Ontology for the ACT Network Shyam Visweswaran

Association of a history of pneumonia with mortality for Coronavirus Disease 2019 (COVID-2019) Zachary Strasser

Transparency, Reproducibility, and Team Science in the National COVID Cohort Collaborative (N3C) Anita Walden

Creating a national COVID-19 Limited Data Set: Regulatory and governance innovations within the National COVID Cohort Collaborative (N3C) Melissa Haendel

2021032413:3015:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S34: Oral Presentations - COVID In and Among Patients

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Suresh Bhavnani Hannah Mannering Wanting Cui Mary Regina Boland Junghwan Lee

Discovering Changes in the Neonatal Intensive Care Unit Structures Before and During the COVID-19 Pandemic: A Network Analysis Hannah Mannering

Severity Prediction for COVID-19 Patients via Recurrent Neural Networks Junghwan Lee

Impact of COVID-19 Pandemic on the Use of Telemedicine in Academic Medical Center in New York City Wanting Cui

Association of Neighborhood-Level Factors and COVID-19 Infection Patterns in Philadelphia Using Spatial Regression Mary Regina Boland

Heterogeneity in COVID-19 Patients at Multiple Levels of Granularity: From Biclusters to Clinical Interventions Suresh Bhavnani

2021032413:3015:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S35: Oral Presentations - FHIR Applications

Session Credits: 1.50

Oral Presentations

Informatics Implementation Session

SPEAKER(S):

Sijia Liu Andrey Soares James Jones Nansu Zong William Hammond

FHIR Used to Expedite sIRB Workflow William Hammond

A Landscape Survey of Planned SMART/HL7 Bulk FHIR Data Access API Implementations and Tools James Jones

Predicting Primary Cancers Based on HL7 Fast Healthcare Interoperability Resources (FHIR) and Resource Description Framework (RDF) Nansu Zong

Integration of NLP2FHIR Representation with Deep Learning Models for EHR Phenotyping: A Pilot Study on Obesity Datasets Sijia Liu

Interoperable and Computable Evidence-Based Medicine (EBM) on FHIR Andrey Soares

2021032413:3015:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S36: Oral Presentations - (Un-)Natural Language

Session Credits: 1.50

Oral Presentations

Multi-track Session

SPEAKER(S):

Suranga Kasthurirathne Nicholas Dobbins Abdullah Ahmed Kirk Roberts Natthanaphop Isaradech

Performance of Automatic De-identification Across Different Note Types Nicholas Dobbins

Auto-mapping Clinical Documents to ICD-10 using SNOMED-CT Natthanaphop Isaradech

Extracting Concepts for Precision Oncology from the Biomedical Literature Kirk Roberts

Benchmarking Modern Named Entity Recognition Techniques for Free-text Health Record Deidentification Abdullah Ahmed

Generative Adversarial Networks for Creating Synthetic Free-Text Medical Data: A Proposal for Collaborative Research and Re-use of Machine Learning Models Suranga Kasthurirathne

2021032413:3015:00 000

WED, MAR 24

C59D8809-7244-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S37: Ignite-style Talks - Too Long; Didn’’t Watch: AMIA Informatics Summit in 90 minutes

Session Credits: 1.50

Ignite-style Talks

Multi-track Session

SPEAKER(S):

Kelley Paskov Victor Garcia Vivian Gainer Ellen Kerns Joyce Niland Peter Plantes Christopher Kunney Wei Shao Shawn Murphy Graciela Gonzalez

Developing and Implementing a “Digital First” Patient Journey in your Organization post COVID-19 Christopher Kunney

COVID-19 Data Commons: A Single Source of Truth Victor Garcia

Proactive Public Health Response: The power of localized data Peter Plantes

How a Zoom Forum is Changing the Way Researchers Study Covid-19 at Mass General Brigham Vivian Gainer

Mobilizing the Accrual to Clinical Trials (ACT) Network for Covid-19 Research (and Beyond) Shawn Murphy

Sibling-pair Linkage Test Reveals Protective Autism Locus at 10q26 Kelley Paskov

Implementation of a Household Level COVID-19 Screening Tool in Schools Ellen Kerns

A comparative view of reported adverse effects of statins in social media, regulatory data, drug information databases and systematic reviews Graciela Gonzalez

A Natural Language Processing (NLP) Pipeline to Evaluate BRCA1/2 Testing in Ovarian Cancer Patients at City of Hope Cancer Center and Affiliated Community Sites Joyce Niland

Deep Multi-View Clustering (DMVC) to Characterize Chronic Cough Clusters using EHR data Wei Shao

2021032413:3015:00 000

WED, MAR 24

65FFB973-9B5A-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 1:30 PM - 3:00 PM EST

S38: Panel - JAMIA as a Voice for Diversity, Equity, and Inclusion in Biomedical and Health Informatics, Health Care, and Society

Session Credits: 1.50

Panel

Multi-track Session

SPEAKER(S):

Dr. Suzanne Bakken Dr. Tina Hernandez-Boussard Dr. Tiffany Veinot Dr. Matt Pantell Dr. Nir Menachemi

2021032413:3015:00 000

WED, MAR 24

C79D8809-7244-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 3:30 PM - 5:00 PM EST

Poster Session 2

Posters

Age Aware Model of Phenotype Risk Score Layla Aref

A Natural Language Processing Pipeline for the De-identification of Clinical Notes at an Academic Medical Center Arnav Bhandari

Schematic Design of a Veterans Health Information Exchange Performance Reporting Platform Nathan Botts

Knowledge Management of Clinical Pharmacogenetic Information – Complexities and Challenges Christine Cheng

Open Integrated Analysis of Multi-institutional Data using ICEES Karamarie Fecho

Disparities in patient portal enrollment and telehealth among oncology patients Meera Garriga

Consult Tracking Management Solution and Scheduler Workflow Metrics in the U.S. Department of Veterans Affairs Evelynn Gerardo

Perioperative Workflow Management System and Improvement in First Case On-Time Start Rates in the U.S. Department of Veterans Affairs Mrs. Amy Green

Evaluation of Data Management of COVID-19 Clinical Trials Using a Cloud-Based Clinical Data-Management Platform Rezzan Hekmat

What can online Ovarian Cancer Forum present us about patients’ information needs? - A Text-Mining Approach Chi Ching Hui

Development of a Graph Model for the OMOP Common Data Model Mengjia Kang

Chronicles of Nationwide Health Information Exchange (HIE) Told through Data Profiling of the Veterans HIE Audit Log Eric Pan

Assessing Organizational Context for Implementation Jennifer Garvin

Semi-Automated Corpus Augmentation Methods for Enriching Laboratory Test Names with Value Annotations Paul Heider

Data-Specific Training for Detecting Reports of Medication Intake on Twitter Ari Klein

Compound Prioritization via Ranking and Graph Representation Learning Xia Ning

Communication Efficient Distributed Tensor Factorization based on Local SGD for Collaborative Health Data Analysis Zhangyi Pan

Development and Alpha Testing of Specifications for a VTE/Major Bleeding Electronic Clinical Quality Measure (eCQM) Avery Pullman

Predicting Long-Term Care Demand from Medical and Long-Term Care Insurance Claims in Japan Jumpei Sato

Development and Evaluation of a Natural Language Processing (NLP) Pipeline for Extracting Endoscopic Measurements Mohammed Ullah

Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data Zehao Yu

A Pilot Study on An In-Depth Comparison Between Nurse and Physician Health Terminology from a Non-professional Perspective. Leen Khatib

Using Natural Language Processing to Predict ICU Transfer in HospitalizedCOVID-19 Patients Phillip Kinney

Leveraging Electronic Health Records Data for Predicting Alzheimer’s Disease Progression Sayantan Kumar

Measuring NICU Healthcare Workers’ Time Spent on Collaborative Activities Through EHR Audit Logs Patrick Li

Characterizing Respiratory Symptoms and COVID-19 Trends from OMOP-CDM database for Public Health Reporting Jonathan Lu

Leveraging the ACT Network for Covid-19 Research Douglas MacFadden

COVID-19 Research: Messy Data, Consequent Pitfalls and Lessons Learned Tanja Magoc

Loss of diagnostic data due to claim form limitations Vojtech Huser

Answering Common COVID-19 Questions with Conversational Technology Mollie McKillop

A Pilot Evaluation of the Performance of MetaMap for Processing Clinical Actionable Genomics Texts Omika Merchant

Listening to your Data:Analyzing Medical Concept Mentions in Longitudinal Clinical Notes Asher Moldwin

BRATsynthetic: A Software Tool for the Generation of HIPAA Safe Harbor Compliant Replacement Text Tobias O'Leary

Weight-based Integrated Algorithm for Modeling Time-to-Event Data of Multiple Databases without Data Sharing Ji Ae Park

Impact of the ARX Anonymization Tool for Biomedical Data – A Review Fabian Prasser

A Novel Solution for Clinical Knowledge Management using Collibra Aravind Rajagopalan

Characterizing Effects of Air Pollution Exposure in Diabetic Patients Affected by COVID19 Naomi Riches

Usability and Impact of a Care-Management System in Holistically Delivering Services to Vulnerable Populations Rubina Rizvi

A COVID-19 Drug Repurposing Network from Integrated Text Mining and Semantic Data Mining Karen Ross

Challenges in capturing comorbidities using Medicare data Hojjat Salmasian

CoviDash-SM: A public COVID19 dashboard for social media data-based research and surveillance Abeed Sarker

Social determinants of health and opioid dependence and overdose Fadia Shaya

Evaluation of Multiple Myeloma Clinical Decision Support Tool Value When Populated with Community Health System Data Ben Smith

DEPOT: Revealing Trajectories of Alzheimer’s Disease Development for Precision Monitoring and Interventions Using Real-world Evidence Jing Su

The PREVENT Tool: An Implementation of the Yelp Fusion Application Programming Interface (API) Esra Taner

MedType: Improving Medical Entity Linking with Semantic Type Prediction Denis Newman-Griffis

Network analysis to characterize chronological relationships in comorbidity trajectories Clark Wang

Leveraging Broadcast Text-Messages to Deliver Real-time Clinical Guidance to Hospital Employees During the COVID-19 Pandemic Cheyenne Williams

Blockchain for DSCSA Compliance in Hospital-at-Home Programs Stephanie Zawada

Identifying Barriers and Facilitators to Integrating Patient-Generated Health Data into EHR Jiancheng Ye

2021032415:3017:00 000

WED, MAR 24

CD9D8809-7244-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 10:00 AM - 11:30 AM EST

S39: Oral Presentations - Applied Natural Language Processing

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Sujay Kulshrestha Surabhi Datta Amy George Kevin Peterson Jennifer John

An Examination of the Statistical Laws of Semantic Change in Clinical Notes Kevin Peterson

Recurrent Neural Networks to Automatically Identify Rare Disease Epidemiologic Studies from PubMed Jennifer John

Applications of Aspect-based Sentiment Analysis on Psychiatric Clinical Notes to Study Suicide in Youth Amy George

Classification of Chest Injury Severity Using Clinical Documents Sujay Kulshrestha

Leveraging Spatial Information in Radiology Reports for Ischemic Stroke Phenotyping Surabhi Datta

2021032510:0011:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 10:00 AM - 11:30 AM EST

S40: Oral Presentations - Overcoming Adversity

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Prithwish Chakraborty Darshini Mahendran William Ogallo Rose Goueth Beau Norgeot

An Analysis of Two Sources of Cardiology Patient Data to Measure Medication Agreement Rose Goueth

MAgEC: Using Non-Homogeneous Ensemble Consensus for Predicting Drivers in Unexpected Mechanical Ventilation Beau Norgeot

Extracting Adverse Drug Events from Clinical notes Darshini Mahendran

Detection of Anomalous Patterns Associated with the Impact of Medications on 30-Day Hospital Readmission Rates in Diabetes Care William Ogallo

Blending Knowledge in Deep Recurrent Networks for Adverse Event Prediction at Hospital Discharge Prithwish Chakraborty

2021032510:0011:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 10:00 AM - 11:30 AM EST

S41: Oral Presentations - Informatics Applications, Architecture, and Methodology for Public Health and Global Health

Session Credits: 1.50

Oral Presentations

Informatics Implementation Session

SPEAKER(S):

Byron Wallace Shamsi Berry Jesutofunmi Omiye Ifrah Idrees Girmaw Tadesse

Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarization Byron Wallace

Successes and Misses of Global Health Development: Detecting Temporal Concept Drift of Under-5 Mortality Prediction Models with Bias Scan Ifrah Idrees

Refined, regionally-specific data standards reveal heterogeneity in Hispanic death records Shamsi Berry

Data-level Linkage of Multiple Surveys for Improved Understanding of Global Health Challenges Girmaw Tadesse

Effect of Reopening Orders on COVID-19 Hospitalizations in the US Jesutofunmi Omiye

2021032510:0011:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 10:00 AM - 11:30 AM EST

S42: Panel - Health Information Technology Interoperability Standards to Advance the Precision Medicine Initiative

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Teresa Zayas Cabán Tracy Okubo Robert Freimuth Ida Sim Stephanie Devaney

2021032510:0011:30 000

THU, MAR 25

7D78B9F2-7544-EB11-80E9-E2016027A0A5
7F78B9F2-7544-EB11-80E9-E2016027A0A5
C678B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 10:00 AM - 11:30 AM EST

S43: Panel - Virtually Ready: Technological Tools and Adaptations in a Children?s Hospital during the COVID-19 Pandemic

Session Credits: 1.50

Panel

Data Science Session

SPEAKER(S):

Tiranun Rungvivatjarus Amy Chong Cynthia Kuelbs Mario Bialostozky Jeannie Huang Begem Lee

2021032510:0011:30 000

THU, MAR 25

5F78B9F2-7544-EB11-80E9-E2016027A0A5
6B78B9F2-7544-EB11-80E9-E2016027A0A5
A0D8843C-7644-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 12:00 PM - 1:30 PM EST

S44: Panel - FHIR in the Research Continuum: The emerging Vulcan FHIR Accelerator

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Micky Tripathi Janet Campbell Viet Nguyen Christopher Chute Clement McDonald Charles Jaffe

2021032512:0013:30 000

THU, MAR 25

6378B9F2-7544-EB11-80E9-E2016027A0A5
9578B9F2-7544-EB11-80E9-E2016027A0A5
CC78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 12:00 PM - 1:30 PM EST

S45: Panel - Using Synthetic Data to Enhance Antimicrobial Use Data Quality within the National Healthcare Safety Network

Session Credits: 1.50

Panel

Data Science Session

SPEAKER(S):

Senthil Nachimuthu Wendy Wise Joseph Chuong Shuai Zheng Jay Kim

2021032512:0013:30 000

THU, MAR 25

7578B9F2-7544-EB11-80E9-E2016027A0A5
7978B9F2-7544-EB11-80E9-E2016027A0A5
C878B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 12:00 PM - 1:30 PM EST

S46: Panel - Machine Learning to improve care delivery: Opportunities and Challenges

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Hongfang Liu Nigam Shah Jyotishman Pathak Kavishwar Wagholikar Shawn Murphy

2021032512:0013:30 000

THU, MAR 25

AB78B9F2-7544-EB11-80E9-E2016027A0A5
AD78B9F2-7544-EB11-80E9-E2016027A0A5
AF78B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 12:00 PM - 1:30 PM EST

S47: Panel - Accelerating an Application Programing Interface-based Ecosystem with Real-World Use Cases

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Daniel Chavez Kevin Chaney Anjum Khurshid Kenneth Mandl

2021032512:0013:30 000

THU, MAR 25

6378B9F2-7544-EB11-80E9-E2016027A0A5
7578B9F2-7544-EB11-80E9-E2016027A0A5
9578B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 12:00 PM - 1:30 PM EST

S48: Panel - Challenges and Opportunities for Implementing Artificial Intelligence at the Speed of Technology Innovation During the COVID-19 Era

Session Credits: 1.50

Panel

Data Science Session

SPEAKER(S):

Michael Matheny Yuri Quintana Brett South Irene Dankwa-Mullan Wendy Chapman

2021032512:0013:30 000

THU, MAR 25

6B78B9F2-7544-EB11-80E9-E2016027A0A5
9178B9F2-7544-EB11-80E9-E2016027A0A5
A178B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 2:00 PM - 3:30 PM EST

S49: Oral Presentations - The CRI Trifecta: Data Quality, Data Models, and Clinical Trials

Session Credits: 1.50

Oral Presentations

Clinical Research Informatics Session

SPEAKER(S):

Hao Liu Franck Diaz-Garelli Zhe He Vojtech Huser

The Impact of Data Availability on Algorithmic Diabetes Type Detection using Electronic Health Records: The SEARCH for Diabetes in Youth Study Franck Diaz-Garelli

ctGATE: A Clinical Trial Generalizability Assessment Toolbox Zhe He

Data Characterization of Medicaid: Legacy and New Data Formats in the CMS Virtual Research Data Center Vojtech Huser

A Comparison between Human and NLP-based Annotation of Clinical Trial Eligibility Criteria Text Using The OMOP Common Data Model Hao Liu

CONSIDER Statement: Consolidated Recommendations for Sharing Individual Participant Data from Human Clinical Studies Vojtech Huser

2021032514:0015:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 2:00 PM - 3:30 PM EST

S50: Oral Presentations - Timing is Everything

Session Credits: 1.50

Oral Presentations

Data Science Session

SPEAKER(S):

Lindsay Zimmerman David Chen Christina Ji Abu Mosa Nrupen Bhavsar

Application of a Novel Sequential Pattern Mining Method to Study Longitudinal Social Determinants of Health through Young Adulthood: The CARDIA Study Lindsay Zimmerman

Machine Learning Approaches for Predicting Diabetes-Related Long-Term Complications Using Real-World EHR Data Abu Mosa

Trajectory Inspection: A Method for Iterative Clinician-Driven Design of Reinforcement Learning Studies Christina Ji

Impact of variable look-back period length on cardiovascular outcomes when using electronic health record data for epidemiologic research Nrupen Bhavsar

Early Detection of Post-Surgical Complications using Time-series Electronic Health Records David Chen

2021032514:0015:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
516D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 2:00 PM - 3:30 PM EST

S51: Oral Presentations - Machine Learning for Improving Patient Care

Session Credits: 1.50

Oral Presentations

Informatics Implementation Session

SPEAKER(S):

Xiao Dong Julian Hong Sean Yu Thanh Nguyen-Duc Rohith Kumar Thiruvalluru

Deep EHR Spotlight: a Framework and Mechanism to Highlight Events in Electronic Health Records for Explainable Predictions Thanh Nguyen-Duc

Developing High Performance Secure Multi-Party Computation Protocols in Healthcare: A Case Study of Patient Risk Stratification Xiao Dong

Comparing Suicide Risk Insights derived from Clinical and Social Media data Rohith Kumar Thiruvalluru

System for High Intensity EvaLuation During Radiation Therapy (SHIELD-RT): A prospective randomized study of machine learning-directed clinical evaluations during outpatient cancer radiation and chemoradiation Julian Hong

Sepsis Prediction in the General Ward Setting Sean Yu

2021032514:0015:30 000

THU, MAR 25

C59D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 2:00 PM - 3:30 PM EST

S52: Panel - Precision Medicine facilitated through Registry Science: The Challenges and Solutions Associated with Constructing a Nationally-focused Registries by Aggregating a Multi-faceted Patient-focused Datasets

Session Credits: 1.50

Panel

Translational Bioinformatics Session

SPEAKER(S):

Steven Labkoff Leon Rozenblit Claudio Faria Kathleen Hewitt

2021032514:0015:30 000

THU, MAR 25

6B78B9F2-7544-EB11-80E9-E2016027A0A5
6F78B9F2-7544-EB11-80E9-E2016027A0A5
C678B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
576D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 2:00 PM - 3:30 PM EST

S53: Panel - Pandemic Informatics: Tuning Expectations of Real World Data ? Lessons Learned from the National COVID Cohort Collaborative (N3C)

Session Credits: 1.50

Panel

Informatics Implementation Session

SPEAKER(S):

Matvey Palchuk Michele Morris Robert Miller Emily Pfaff Kristin Kostka

2021032514:0015:30 000

THU, MAR 25

5B78B9F2-7544-EB11-80E9-E2016027A0A5
6B78B9F2-7544-EB11-80E9-E2016027A0A5
7778B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
536D5ED1-7444-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 4:00 PM - 5:00 PM EST

Closing Session and Keynote Presentation: Abigail Echo-Hawk, MA

Plenary

2021032516:0017:00 000

THU, MAR 25

CC9D8809-7244-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 10:00 AM - 11:00 AM EST

Opening Plenary Session and Keynote Presentation: Dr. Ned Sharpless

Plenary

2021032210:0011:00 000

MON, MAR 22

CC9D8809-7244-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S01: Panel - The Digital Recipe for Success: Conducting Clinical Research Using Mobile Apps

Session Credits: 1.50

Panel

Clinical Research Informatics Session

SPEAKER(S):

Alexander Turchin Timothy Smith Jukka-Pekka Onnela Mihir Kamdar

2021032211:3013:00 000

MON, MAR 22

6578B9F2-7544-EB11-80E9-E2016027A0A5
B678B9F2-7544-EB11-80E9-E2016027A0A5
C79D8809-7244-EB11-80E9-E2016027A0A5
1651479F-7444-EB11-80E9-E2016027A0A5

Monday, Mar 22, 2021

Monday, Mar 22, 2021 11:30 AM - 1:00 PM EST

S02: Systems Demonstrations - Bringing it all together: The best of data integration

Session Credits: 1.50

Systems Demonstrations

Multi-track Session

SPEAKER(S):

Elisabeth Scheufele Samuel Volchenboum Clark Evans

Gaining Enriched Insight into Patient Populations by Appending Claims Data to National Health Survey Responses and a Market Segmentation System Elisabeth Scheufele

DataKnots: A Framework for Building Domain Specific Query Languages Clark Evans

The Pediatric Cancer Data Commons - A demonstration of a novel implementation and extension of the Gen3 infrastructure for cohort discovery and data sharing Samuel Volchenboum

2021032211:3013:00 000

MON, MAR 22

CF9D8809-7244-EB11-80E9-E2016027A0A5
556D5ED1-7444-EB11-80E9-E2016027A0A5

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 8:00 AM - 9:00 AM EST

Practical Yoga for Informaticians: Health Body and Mind - Welcome to Yoga

2021032308:0009:00 000

TUE, MAR 23

642860FE-7144-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 8:00 AM - 9:00 AM EST

Practical Yoga for Informaticians: Health Body and Mind - Upper Body Yoga

2021032408:0009:00 000

WED, MAR 24

642860FE-7144-EB11-80E9-E2016027A0A5

Thursday, Mar 25, 2021

Thursday, Mar 25, 2021 8:00 AM - 9:00 AM EST

Practical Yoga for Informaticians: Health Body and Mind - Lower Body Yoga

2021032508:0009:00 000

THU, MAR 25

642860FE-7144-EB11-80E9-E2016027A0A5

Thursday, Mar 11, 2021

Thursday, Mar 11, 2021 3:00 PM - 4:00 PM EST

AMIA - Big Marker Training - Thursday March 11th

2021031115:0016:00 000

THU, MAR 11

Tuesday, Mar 23, 2021

Tuesday, Mar 23, 2021 7:30 PM - 8:30 PM EST

Mixology Class and Networking Event

Social Event

2021032319:3020:30 000

TUE, MAR 23

642860FE-7144-EB11-80E9-E2016027A0A5
CE9D8809-7244-EB11-80E9-E2016027A0A5

Wednesday, Mar 24, 2021

Wednesday, Mar 24, 2021 6:00 PM - 7:15 PM EST

Middle Eastern Feast Cooking Demonstration

Social Event

2021032418:0019:15 000

WED, MAR 24

642860FE-7144-EB11-80E9-E2016027A0A5
CE9D8809-7244-EB11-80E9-E2016027A0A5

Program Schedule

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